The jmzReader library is a collection of Java APIs to parse the most commonly used MS peak list formats. Currently, the library contains parsers for: dta, mgf, ms2, mzData, mzXML, pkl, mzML, PRIDE XML.
All parsers are optimized to be used in conjunction with mzIdentML. Based on a custom build class to efficiently parse text files line by line all parsers can handle arbitrarily large files in minimal memory, allowing easy and efficient processing of peak list files using the Java programming language.
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